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LOC4339875 B3 domain-containing protein Os06g0107800-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339875, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4339875
Gene description
B3 domain-containing protein Os06g0107800-like
Locus tag
OSNPB_060107800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0514G12.9
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Genomic context

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See LOC4339875 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (640337..641365, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (484344..485374, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4339872 Neighboring gene WAT1-related protein At4g01440 Neighboring gene ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic-like Neighboring gene uncharacterized LOC9270779 Neighboring gene MADS-box transcription factor 50-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B3 domain-containing protein Os06g0107800
Names
LOC_Os06g01860
P0644B06.53

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001420981.1 → NP_001407910.1  B3 domain-containing protein Os06g0107800

    Status: VALIDATED

    Source sequence(s)
    AK062921, CI758342
    UniProtKB/Swiss-Prot
    Q0DF88, Q5VS55
    UniProtKB/TrEMBL
    A0A0K0K514, A2Y8E1

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    640337..641365 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5VS55.2 GenPept UniProtKB/Swiss-Prot:Q5VS55

Gene LinkOut

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Molecular Biology Databases
Research Materials