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LOC4339880 cell division control protein 48 homolog C [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339880, updated on 18-Sep-2024

Summary

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Gene symbol
LOC4339880
Gene description
cell division control protein 48 homolog C
Locus tag
OSNPB_060109400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves after flowering (RPKM 9.2), flower buds (RPKM 8.5) and 6 other tissues See more
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Genomic context

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See LOC4339880 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (706965..711676)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (550890..555635)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene WAT1-related protein At3g30340 Neighboring gene WAT1-related protein At3g30340 Neighboring gene haloacid dehalogenase-like hydrolase domain-containing protein Sgpp Neighboring gene UMP-CMP kinase 1-like Neighboring gene uncharacterized LOC107281213

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables preribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cell division control protein 48 homolog C
Names
OSJNBa0004I20.8
Os06g0109400
P0514G12.32
putative cell survival CED-4-interacting protein MAC-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    706965..711676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788751.3 → XP_015644237.1  cell division control protein 48 homolog C

    UniProtKB/TrEMBL
    B8B1J7, B9FR51, Q0DF83, Q5VRN1
    Conserved Domains (3) summary
    COG0464
    Location:210 → 753
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
    pfam00004
    Location:533 → 662
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam16725
    Location:12 → 69
    Nucleolin_bd; Nucleolin binding domain
Nucleotide Protein
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