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LOC4339998 cytochrome P450 704C1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339998, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4339998
Gene description
cytochrome P450 704C1
Locus tag
OSNPB_060129900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 70.2), flowers (RPKM 44.7) and 6 other tissues See more
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Genomic context

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See LOC4339998 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (1739118..1742792, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (1582071..1585817, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene nudix hydrolase 14, chloroplastic Neighboring gene uncharacterized LOC4339997 Neighboring gene uncharacterized LOC4339999 Neighboring gene uncharacterized LOC136356866

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome P450 704C1
Names
Os06g0129900
P0538C01.25
putative cytochrome P450

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    1739118..1742792 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788501.3 → XP_015643987.1  cytochrome P450 704C1

    UniProtKB/TrEMBL
    A0A0P0WRU9, A2Y8V1, A3B812, Q0DEX4, Q658G9
    Conserved Domains (1) summary
    cd11064
    Location:82 → 514
    CYP86A; cytochrome P450 family 86, subfamily A
Nucleotide Protein
Heading Accession and Version

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