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LOC4340041 protein cornichon homolog 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340041, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4340041
Gene description
protein cornichon homolog 4
Locus tag
OSNPB_060136500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CNIH1; OsCNIH
Expression
Ubiquitous expression in flower buds (RPKM 15.4), leaves after flowering (RPKM 15.1) and 6 other tissues See more
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Genomic context

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See LOC4340041 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (2084645..2088239)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (1927251..1930891)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4340039 Neighboring gene uncharacterized protein At4g22758 Neighboring gene enolase 1 Neighboring gene uncharacterized LOC4340043

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Plant and yeast cornichon possess a conserved acidic motif required for correct targeting of plasma membrane cargos. Rosas-Santiago P, et al. Biochim Biophys Acta Mol Cell Res, 2017 Oct. PMID 28723420
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein cornichon homolog 1
Names
LOC_Os06g04500
Os06g0136500
Protein cornichon homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421065.1 → NP_001407994.1  protein cornichon homolog 1

    Status: VALIDATED

    Source sequence(s)
    CI300268, CI519239, CI592352
    UniProtKB/Swiss-Prot
    A0A0P0WS32, A3B864, Q0DET3

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    2084645..2088239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0DET3.2 GenPept UniProtKB/Swiss-Prot:Q0DET3

Gene LinkOut

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Molecular Biology Databases
Research Materials