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LOC4340074 nudix hydrolase 19, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340074, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4340074
Gene description
nudix hydrolase 19, chloroplastic
Locus tag
OSNPB_060141166
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0535G04.4
Expression
Ubiquitous expression in leaves after flowering (RPKM 21.0), roots before flowering (RPKM 19.7) and 6 other tissues See more
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Genomic context

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See LOC4340074 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (2314902..2318043, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (2157500..2160629, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 35 Neighboring gene hexose carrier protein HEX6 Neighboring gene RNA-binding protein involved in heterochromatin assembly dri1 Neighboring gene early nodulin-93

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NADH pyrophosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NAD catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in NADH metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in NADP catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nudix hydrolase 19, chloroplastic
Names
MutT/nudix protein-like
Os06g0141166

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    2314902..2318043 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785757.3 → XP_015641243.1  nudix hydrolase 19, chloroplastic

    UniProtKB/TrEMBL
    A2Y937, Q0DEQ2, Q5VSC2
    Conserved Domains (1) summary
    COG2816
    Location:95 → 391
    NPY1; NADH pyrophosphatase NudC, Nudix superfamily [Nucleotide transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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