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LOC4340077 early nodulin-93 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340077, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4340077
Gene description
early nodulin-93
Locus tag
OSNPB_060141400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0535G04.7
Expression
Restricted expression toward milk grains (RPKM 157.5) See more
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Genomic context

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See LOC4340077 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (2328370..2329480, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (2170962..2173404, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene nudix hydrolase 19, chloroplastic Neighboring gene RNA-binding protein involved in heterochromatin assembly dri1 Neighboring gene early nodulin-93 Neighboring gene early nodulin-93

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
early nodulin-93
Names
Os06g0141400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    2328370..2329480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787064.3 → XP_015642550.1  early nodulin-93

    UniProtKB/TrEMBL
    A2Y939, A3B894
    Conserved Domains (1) summary
    pfam03386
    Location:15 → 93
    ENOD93; Early nodulin 93 ENOD93 protein
Nucleotide Protein
Heading Accession and Version

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