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LOC4340087 protein HEADING DATE 3B-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340087, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4340087
Gene description
protein HEADING DATE 3B-like
Locus tag
OSNPB_060142600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
Ef7; HD3B; Hd-q; Hd17; ELF3-1; OsELF3; OsELF3-1; OsJ_20086
Expression
Broad expression in roots after flowering (RPKM 40.4), leaves after flowering (RPKM 28.1) and 6 other tissues See more
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Genomic context

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See LOC4340087 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (2391704..2396688, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (2234155..2239184, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene early nodulin-93 Neighboring gene wall-associated receptor kinase 5 Neighboring gene uncharacterized LOC136356953 Neighboring gene probable receptor-like protein kinase At5g20050 Neighboring gene putative cytochrome c oxidase subunit 5b-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of photoperiodism, flowering IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein HEADING DATE 3B
Names
ELF3-like protein
ELF3-like protein 1
LOC_Os06g05060
Os06g0142600
P0535G04.25
Protein HEADING DATE 17
Protein HEADING DATE 3B
protein EARLY FLOWERING 3
putative early flowering 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421069.1 → NP_001407998.1  protein HEADING DATE 3B

    Status: VALIDATED

    Source sequence(s)
    AK242105, AP014962, CI301921, CI568448
    UniProtKB/Swiss-Prot
    Q0DEN9, Q9SNQ6
    UniProtKB/TrEMBL
    A0A067Y1W5, H3K2J8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    2391704..2396688 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SNQ6.1 GenPept UniProtKB/Swiss-Prot:Q9SNQ6

Gene LinkOut

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Molecular Biology Databases
Research Materials