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LOC4340199 U-box domain-containing protein 70-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340199, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4340199
Gene description
U-box domain-containing protein 70-like
Locus tag
OSNPB_060159600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 48.3), mature seeds (RPKM 18.5) and 6 other tissues See more
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Genomic context

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See LOC4340199 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (3202502..3206551)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (3042182..3046241)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 70-like Neighboring gene histone H3.2 Neighboring gene hsp70-Hsp90 organizing protein 1 Neighboring gene histone H3.2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Hsp90 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U-box domain-containing protein 70-like
Names
Os06g0159600
P0702F05.34-1
P0702F05.34-2
putative U-box domain-containing heat shock protein
putative stress inducible protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    3202502..3206551
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787429.3 → XP_015642915.1  U-box domain-containing protein 70-like

    UniProtKB/TrEMBL
    A0A0P0WSN6, A0A1V1GZS3, Q5VMX1
    Conserved Domains (5) summary
    smart00504
    Location:376 → 438
    Ubox; Modified RING finger domain
    PLN03088
    Location:192 → 285
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    TIGR02168
    Location:142 → 375
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00006
    Location:169 → 197
    TPR; TPR repeat [structural motif]
    cd16655
    Location:379 → 417
    RING-Ubox_WDSUB1_like; U-box domain, a modified RING finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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