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LOC4340253 proteasome subunit alpha type-4-2-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340253, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4340253
Gene description
proteasome subunit alpha type-4-2-like
Locus tag
OSNPB_060167600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsJ_20263
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Genomic context

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See LOC4340253 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (3583247..3584259)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (3420495..3421530)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene dehydrodolichyl diphosphate synthase CPT3 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g56130 Neighboring gene uncharacterized LOC107277937 Neighboring gene mitochondrial outer membrane import complex protein METAXIN

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in proteasomal protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome core complex, alpha-subunit complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
proteasome subunit alpha type-4-2
Names
20S proteasome alpha subunit C
20S proteasome subunit alpha-3
LOC_Os06g07140
OSJNBa0033B09.8
P0680A03.29
alpha 3 subunit of 20S proteasome
NP_001408158.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421229.1 → NP_001408158.1  proteasome subunit alpha type-4-2

    Status: VALIDATED

    Source sequence(s)
    CF295841, CF332427, CI410798, CI651667
    UniProtKB/Swiss-Prot
    B7EE96, B8B392, P0C8Y9, Q0DE87, Q5VRG3
    UniProtKB/TrEMBL
    I3RVK9, I3RVL5, I3RVL9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    3583247..3584259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5VRG3.1 GenPept UniProtKB/Swiss-Prot:Q5VRG3

Gene LinkOut

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Molecular Biology Databases
Research Materials