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LOC4340341 probable phospholipid hydroperoxide glutathione peroxidase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340341, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4340341
Gene description
probable phospholipid hydroperoxide glutathione peroxidase
Locus tag
OSNPB_060185900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0568D10.7
Expression
Broad expression in roots after flowering (RPKM 91.4), leaves before flowering (RPKM 76.2) and 5 other tissues See more
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Genomic context

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See LOC4340341 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (4485856..4489347)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (4321596..4325114)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g03380, mitochondrial Neighboring gene pentatricopeptide repeat-containing protein At4g30700 Neighboring gene putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 Neighboring gene putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glutathione peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable phospholipid hydroperoxide glutathione peroxidase
Names
Os06g0185900
putative glutathione peroxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    4485856..4489347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787450.3 → XP_015642936.1  probable phospholipid hydroperoxide glutathione peroxidase

    UniProtKB/TrEMBL
    B7FAE9, Q5SMW6
    Conserved Domains (1) summary
    cl00388
    Location:49 → 234
    Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
Nucleotide Protein
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