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LOC4340596 uncharacterized LOC4340596 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340596, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4340596
Gene description
uncharacterized LOC4340596
Locus tag
OSNPB_060235300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 8.8), flower buds (RPKM 6.7) and 6 other tissues See more
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Genomic context

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See LOC4340596 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (7215407..7224356)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (7047248..7056242)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene xyloglucan O-acetyltransferase 1 Neighboring gene xyloglucan O-acetyltransferase 2 Neighboring gene uncharacterized LOC4340598 Neighboring gene uncharacterized LOC136357133

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4340596
Names
OSJNBa0080E19.23
OSJNBb0061B07.38
Os06g0235300
Os06g0235400
zinc finger protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    7215407..7224356
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788182.3 → XP_015643668.1  uncharacterized protein LOC4340596

    UniProtKB/TrEMBL
    B8B4I5, B9FSD9
    Conserved Domains (2) summary
    PTZ00121
    Location:356 → 860
    PTZ00121; MAEBL; Provisional
    pfam16501
    Location:321 → 424
    SCAPER_N; S phase cyclin A-associated protein in the endoplasmic reticulum
Nucleotide Protein
Heading Accession and Version

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