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LOC4340703 uncharacterized LOC4340703 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340703, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4340703
Gene description
uncharacterized LOC4340703
Locus tag
OSNPB_060264700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1001_B06.9
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Genomic context

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See LOC4340703 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (8920852..8921539, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (8745271..8746044, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 3.1 Neighboring gene uncharacterized LOC4340702 Neighboring gene protein CURVATURE THYLAKOID 1A, chloroplastic Neighboring gene carbon catabolite repressor protein 4 homolog 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acylphosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4340703
Names
OSJNBa0037N01.56
Os06g0264700
acylphosphatase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    8920852..8921539 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015786563.3 → XP_015642049.1  uncharacterized protein LOC4340703

    UniProtKB/TrEMBL
    A0A5S6R9R0, A2YBH1, Q0DD22, Q5Z6P5
    Conserved Domains (1) summary
    pfam00708
    Location:40 → 124
    Acylphosphatase
Nucleotide Protein
Heading Accession and Version

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