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LOC4340748 histone-lysine N-methyltransferase CLF-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340748, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4340748
Gene description
histone-lysine N-methyltransferase CLF-like
Locus tag
OSNPB_060275500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 10.0), milk grains (RPKM 9.9) and 6 other tissues See more
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Genomic context

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See LOC4340748 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (9529690..9538013)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (9353713..9362074)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein HD1-like Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene transcription factor bHLH49 Neighboring gene putative U-box domain-containing protein 42

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K27 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PcG protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase CLF-like
Names
Os06g0275500
P0038C05.29
P0676F10.40
histone-lysine N-methyltransferase EZ1
putative Polycomb protein EZ1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    9529690..9538013
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788748.3 → XP_015644234.1  histone-lysine N-methyltransferase CLF-like

    UniProtKB/Swiss-Prot
    Q5VN06
    UniProtKB/TrEMBL
    B8B0K4
    Conserved Domains (1) summary
    smart00317
    Location:748 → 864
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
Nucleotide Protein
Heading Accession and Version

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