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LOC4340876 uncharacterized LOC4340876 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340876, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4340876
Gene description
uncharacterized LOC4340876
Locus tag
OSNPB_060316800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0468A12.9
Expression
Biased expression in roots after flowering (RPKM 20.6), leaves before flowering (RPKM 12.6) and 2 other tissues See more
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Genomic context

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See LOC4340876 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (12436657..12437687, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (12252352..12253384, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene formin-like protein 15 Neighboring gene uncharacterized LOC9267746 Neighboring gene uncharacterized LOC107278474 Neighboring gene uncharacterized LOC107277538

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4340876
Names
B1156C07.39
Os06g0316800
putative glycine rich protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    12436657..12437687 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015786146.3 → XP_015641632.1  uncharacterized protein LOC4340876

    UniProtKB/TrEMBL
    A3BB57, Q5Z4Q3
Nucleotide Protein
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