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LOC4341033 protein MICRORCHIDIA 6 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341033, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4341033
Gene description
protein MICRORCHIDIA 6
Locus tag
OSNPB_060474866
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 15.9), leaves before flowering (RPKM 14.5) and 6 other tissues See more
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Genomic context

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See LOC4341033 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (16766702..16780626, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (15918844..15933061, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277140 Neighboring gene chaperone protein dnaJ C76, chloroplastic Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein MICRORCHIDIA 6
Names
Os06g0474866
Os06g0474900
P0021H10.10-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    16766702..16780626 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788111.3 → XP_015643597.1  protein MICRORCHIDIA 6 isoform X1

    UniProtKB/TrEMBL
    B8B225
    Conserved Domains (1) summary
    cl00075
    Location:273 → 408
    HATPase_c; Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins

  2. XM_015788112.3 → XP_015643598.1  protein MICRORCHIDIA 6 isoform X2

    UniProtKB/TrEMBL
    B8B225
    Conserved Domains (2) summary
    pfam17942
    Location:503 → 640
    Morc6_S5; Morc6 ribosomal protein S5 domain 2-like
    cl00075
    Location:261 → 382
    HATPase; Histidine kinase-like ATPase domain

  3. XM_015788113.3 → XP_015643599.1  protein MICRORCHIDIA 6 isoform X3

    UniProtKB/TrEMBL
    B8B225
    Conserved Domains (1) summary
    cl00075
    Location:273 → 408
    HATPase_c; Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins

  4. XM_015788114.3 → XP_015643600.1  protein MICRORCHIDIA 6 isoform X4

    UniProtKB/TrEMBL
    B7F5F8
    Conserved Domains (1) summary
    cl00075
    Location:18 → 150
    HATPase_c; Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins

RNA

  1. XR_001546884.3 RNA Sequence

  2. XR_001546883.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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