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LOC4341282 small ribosomal subunit protein eS24z [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341282, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4341282
Gene description
small ribosomal subunit protein eS24z
Locus tag
OSNPB_060555400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 191.8), flowers (RPKM 127.6) and 6 other tissues See more
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Genomic context

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See LOC4341282 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (22021801..22025692)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (21163223..21167157)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene ABC transporter G family member 42-like Neighboring gene uncharacterized LOC112939301 Neighboring gene tRNA A64-2'-O-ribosylphosphate transferase Neighboring gene amino acid permease 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small ribosomal subunit protein eS24z
Names
40S ribosomal protein S24-1
Os06g0555400
P0458E11.17
putative 40S ribosomal protein S24

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    22021801..22025692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788209.2 → XP_015643695.1  small ribosomal subunit protein eS24z

    UniProtKB/TrEMBL
    A2ZXD8, B8B3L8, B9FTR3, Q5Z9S4
    Conserved Domains (1) summary
    PTZ00071
    Location:5 → 130
    PTZ00071; 40S ribosomal protein S24; Provisional
Nucleotide Protein
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