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LOC4341347 ent-kaurene oxidase 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341347, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4341347
Gene description
ent-kaurene oxidase 2-like
Locus tag
OSNPB_060570100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
D35; OsKO1; OsKO2; OsKOL2; OsKOL3; OsKOS3; OsKOS4; CYP701A6; CYP701A19
Expression
Broad expression in roots before flowering (RPKM 45.7), flowers (RPKM 22.1) and 5 other tissues See more
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Genomic context

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See LOC4341347 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (22932677..22941280, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (22073887..22082497, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene ent-sandaracopimaradiene 3-hydroxylase-like Neighboring gene ent-kaurene oxidase-like 3 Neighboring gene uncharacterized LOC107278738 Neighboring gene ent-kaurene oxidase-like protein 1 Neighboring gene putative CBL-interacting protein kinase 27

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The rice dwarf virus P2 protein interacts with ent-kaurene oxidases in vivo, leading to reduced biosynthesis of gibberellins and rice dwarf symptoms. Zhu S, et al. Plant Physiol, 2005 Dec. PMID 16299167, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ent-kaurene oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ent-kaurene oxidation to kaurenoic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in gibberellin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ent-kaurene oxidase 2
Names
Cytochrome P450 701A19
Cytochrome P450 701A6
Ent-kaurene oxidase 1
Ent-kaurene oxidase 2
Ent-kaurene oxidase-like 2
LOC_Os06g37330
LOC_Os06g37364
OSJNBa0062E01.34
OSJNBa0062E01.38
Protein DWARF 35
ent-kaurene oxidase KO4
NP_001408561.1
XP_015643246.1
XP_015643247.1
XP_015643250.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421632.1 → NP_001408561.1  ent-kaurene oxidase 2

    Status: VALIDATED

    Source sequence(s)
    AK066285, AU166690, CI221803, CI616866
    UniProtKB/Swiss-Prot
    A0A0P0WXW2, Q5Z5R4, Q68YV8
    UniProtKB/TrEMBL
    B8B3T9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    22932677..22941280 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787764.3 → XP_015643250.1  ent-kaurene oxidase 2 isoform X3

    UniProtKB/TrEMBL
    B8B3T9
    Conserved Domains (1) summary
    PLN02655
    Location:45 → 508
    PLN02655; ent-kaurene oxidase

  2. XM_015787760.3 → XP_015643246.1  ent-kaurene oxidase 2 isoform X1

    UniProtKB/TrEMBL
    B9FTU3
    Conserved Domains (1) summary
    PLN02655
    Location:146 → 609
    PLN02655; ent-kaurene oxidase

  3. XM_015787761.3 → XP_015643247.1  ent-kaurene oxidase 2 isoform X2

    UniProtKB/TrEMBL
    B8B3T9
    Conserved Domains (1) summary
    PLN02655
    Location:45 → 508
    PLN02655; ent-kaurene oxidase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5Z5R4.1 GenPept UniProtKB/Swiss-Prot:Q5Z5R4

Gene LinkOut

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Research Materials