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LOC4341422 cyanidin 3-O-rutinoside 5-O-glucosyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341422, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4341422
Gene description
cyanidin 3-O-rutinoside 5-O-glucosyltransferase
Locus tag
OSNPB_060593200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4341422 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (24161795..24163533)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (23309848..23311951)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene multiprotein-bridging factor 1c Neighboring gene UDP-galactose/UDP-glucose transporter 3 Neighboring gene crocetin glucosyltransferase, chloroplastic Neighboring gene 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables quercetin 3-O-glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables quercetin 7-O-glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyanidin 3-O-rutinoside 5-O-glucosyltransferase
Names
Os06g0593200
P0502H06.32
putative glucosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    24161795..24163533
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015786022.3 → XP_015641508.1  cyanidin 3-O-rutinoside 5-O-glucosyltransferase

    UniProtKB/TrEMBL
    B9FU00, Q0DB83, Q69XD3
    Conserved Domains (1) summary
    cl10013
    Location:11 → 480
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
Nucleotide Protein
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