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LOC4341432 auxin-responsive protein IAA23-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341432, updated on 3-Dec-2024

Summary

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Gene symbol
LOC4341432
Gene description
auxin-responsive protein IAA23-like
Locus tag
OSNPB_060597000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
IAA23; OsJ_21866
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Genomic context

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See LOC4341432 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (24353546..24355076)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (23501970..23503503)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene palmitoyl-acyl carrier protein thioesterase, chloroplastic Neighboring gene small nucleolar RNA Z247 Neighboring gene probable protein phosphatase 2C 57 Neighboring gene glutathione S-transferase T3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
auxin-responsive protein IAA23
Names
Indoleacetic acid-induced protein 23
LOC_Os06g39590
P0417D05.17-1
putative iaa4.1 deduced protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421637.1 → NP_001408566.1  auxin-responsive protein IAA23

    Status: VALIDATED

    Source sequence(s)
    AK069376, CI252518, CI288979, CI341209
    UniProtKB/Swiss-Prot
    Q0DB73, Q69VE0
    UniProtKB/TrEMBL
    A2YEN6

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    24353546..24355076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q69VE0.1 GenPept UniProtKB/Swiss-Prot:Q69VE0

Gene LinkOut

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Molecular Biology Databases
Research Materials