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LOC4341465 SPX domain-containing protein 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341465, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4341465
Gene description
SPX domain-containing protein 1-like
Locus tag
OSNPB_060603600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SPX1; OsSPX1; OsJ_21901
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Genomic context

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See LOC4341465 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (24727206..24731754, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (23875408..23879989, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein MKS1 Neighboring gene DNA-directed RNA polymerase III subunit RPC6 Neighboring gene uncharacterized LOC136356903 Neighboring gene uncharacterized LOC107281177 Neighboring gene ethylene-responsive transcription factor WIN1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice. Zhang K, et al. Plant Biotechnol J, 2016 Aug. PMID 26806409, Free PMC Article
  2. Mechanism of phosphate sensing and signaling revealed by rice SPX1-PHR2 complex structure. Zhou J, et al. Nat Commun, 2021 Dec 2. PMID 34857773, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Mechanism of phosphate sensing and signaling revealed by rice SPX1-PHR2 complex structure.
    Title: Mechanism of phosphate sensing and signaling revealed by rice SPX1-PHR2 complex structure.
  2. SPX1 role in male sterility, pollen development and grain yield
    Title: Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cellular response to phosphate starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SPX domain-containing protein 1
Names
LOC_Os06g40120
P0486H12.37
Protein SPX DOMAIN GENE 1
putative ids-4 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421644.1 → NP_001408573.1  SPX domain-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    AK063544, AU056720, CA999573, CI148497, CI654845, CI673816, CI753741
    UniProtKB/Swiss-Prot
    A0A0P0WYU6, Q69XJ0

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    24727206..24731754 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066311166.1 → XP_066167263.1  SPX domain-containing protein 1 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q69XJ0.1 GenPept UniProtKB/Swiss-Prot:Q69XJ0

Gene LinkOut

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Molecular Biology Databases
Research Materials