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LOC4341479 protein WVD2-like 5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341479, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4341479
Gene description
protein WVD2-like 5
Locus tag
OSNPB_060606800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4341479 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (24953240..24958070, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24091288..24096143, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278588 Neighboring gene uncharacterized LOC4341478 Neighboring gene nuclear pore complex protein NUP1 Neighboring gene glucan endo-1,3-beta-glucosidase 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein WVD2-like 5
Names
BRI1-KD interacting protein 118-like
Os06g0606800
P0029C06.13-1
P0029C06.13-2
P0029C06.13-3
protein WAVE-DAMPENED 2
putative BRI1-KD interacting protein 118

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    24953240..24958070 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788076.3 → XP_015643562.1  protein WVD2-like 5 isoform X4

    UniProtKB/TrEMBL
    A0A0P0WYI8, A0A0P0WYR2, Q69Q42
    Conserved Domains (1) summary
    pfam06886
    Location:196 → 280
    TPX2; Targeting protein for Xklp2 (TPX2)

  2. XM_015788075.3 → XP_015643561.1  protein WVD2-like 5 isoform X3

    UniProtKB/TrEMBL
    A0A0P0WYR2
    Conserved Domains (2) summary
    PTZ00121
    Location:28 → 332
    PTZ00121; MAEBL; Provisional
    pfam06886
    Location:197 → 281
    TPX2; Targeting protein for Xklp2 (TPX2)

  3. XM_015788074.3 → XP_015643560.1  protein WVD2-like 5 isoform X2

    UniProtKB/TrEMBL
    A0A0P0WYR2
    Conserved Domains (2) summary
    pfam06886
    Location:202 → 256
    TPX2; Targeting protein for Xklp2 (TPX2)
    cl23849
    Location:150 → 323
    TrbI; Bacterial conjugation TrbI-like protein

  4. XM_015788072.3 → XP_015643558.1  protein WVD2-like 5 isoform X1

    UniProtKB/TrEMBL
    A0A0P0WYR2
    Conserved Domains (2) summary
    pfam06886
    Location:203 → 257
    TPX2; Targeting protein for Xklp2 (TPX2)
    cl23849
    Location:151 → 324
    TrbI; Bacterial conjugation TrbI-like protein
Nucleotide Protein
Heading Accession and Version

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