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LOC4341497 E3 ubiquitin-protein ligase RGLG2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341497, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4341497
Gene description
E3 ubiquitin-protein ligase RGLG2
Locus tag
OSNPB_060608800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots after flowering (RPKM 186.5), leaves after flowering (RPKM 186.0) and 5 other tissues See more
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Genomic context

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See LOC4341497 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25091322..25096477, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24229352..24234707, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting-associated protein 32 homolog 2 Neighboring gene protein transport protein SFT2 Neighboring gene fructose-bisphosphate aldolase 5, cytosolic Neighboring gene uncharacterized LOC107281192 Neighboring gene subtilisin-like protease SBT5.3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RGLG2
Names
Os06g0608800
P0556B08.19-1
P0556B08.19-2
putative copine I
putative copine-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    25091322..25096477 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787675.3 → XP_015643161.1  E3 ubiquitin-protein ligase RGLG2

    UniProtKB/TrEMBL
    A0A0P0WYT5, Q0DB16, Q69V55, Q69V56
    Conserved Domains (2) summary
    pfam13920
    Location:401 → 443
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    cl00057
    Location:67 → 317
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_015787676.3 → XP_015643162.1  E3 ubiquitin-protein ligase RGLG2

    UniProtKB/TrEMBL
    A0A0P0WYT5, Q0DB16, Q69V55, Q69V56
    Conserved Domains (2) summary
    pfam13920
    Location:401 → 443
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    cl00057
    Location:67 → 317
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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