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LOC4341539 uncharacterized LOC4341539 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341539, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4341539
Gene description
uncharacterized LOC4341539
Locus tag
OSNPB_060618600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 22.2), roots after flowering (RPKM 21.9) and 6 other tissues See more
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Genomic context

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See LOC4341539 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25694123..25702336)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24831695..24839896)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein N-terminal asparagine amidohydrolase Neighboring gene uncharacterized LOC4341538 Neighboring gene uncharacterized LOC136356962 Neighboring gene VQ motif-containing protein 18 Neighboring gene uncharacterized LOC136357093

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of Ric1-Rgp1 guanyl-nucleotide exchange factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4341539
Names
Os06g0618600
P0012B02.13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    25694123..25702336
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788705.3 → XP_015644191.1  uncharacterized protein LOC4341539

    UniProtKB/TrEMBL
    B9FU60
    Conserved Domains (1) summary
    pfam08737
    Location:134 → 495
    Rgp1

  2. XM_015788706.3 → XP_015644192.1  uncharacterized protein LOC4341539

    UniProtKB/TrEMBL
    B9FU60
    Conserved Domains (1) summary
    pfam08737
    Location:134 → 495
    Rgp1

RNA

  1. XR_010742053.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Research Materials