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LOC4341544 uncharacterized LOC4341544 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341544, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4341544
Gene description
uncharacterized LOC4341544
Locus tag
OSNPB_060620600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0040H10.9
Expression
Ubiquitous expression in flowers (RPKM 22.1), flower buds (RPKM 20.8) and 6 other tissues See more
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Genomic context

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See LOC4341544 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25779676..25782683, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24917243..24920342, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4 Neighboring gene TPD1 protein homolog 1 Neighboring gene uncharacterized LOC107281308 Neighboring gene putative disease resistance protein At3g14460

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4341544
Names
Os06g0620600
P0012B02.41
protein YIF1B
putative yip1 interacting factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    25779676..25782683 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785538.3 → XP_015641024.1  uncharacterized protein LOC4341544

    UniProtKB/TrEMBL
    A0A0P0WZA2, Q0DAW9, Q69XN2
    Conserved Domains (1) summary
    pfam03878
    Location:42 → 263
    YIF1

  2. XM_015785539.3 → XP_015641025.1  uncharacterized protein LOC4341544

    UniProtKB/TrEMBL
    A0A0P0WZA2, Q0DAW9, Q69XN2
    Conserved Domains (1) summary
    pfam03878
    Location:42 → 263
    YIF1
Nucleotide Protein
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