U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4341545 putative disease resistance protein At3g14460 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341545, updated on 16-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4341545
Gene description
putative disease resistance protein At3g14460
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves after flowering (RPKM 3.3), roots after flowering (RPKM 2.7) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4341545 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25792335..25798528, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24929901..24936231, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341544 Neighboring gene uncharacterized LOC107281308 Neighboring gene putative disease resistance protein RGA3 Neighboring gene putative disease resistance protein RGA3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to other organism IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
putative disease resistance protein At3g14460; putative disease resistance protein RGA4
Names
P0040H10.15

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    25792335..25798528 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026026490.2 → XP_025882275.1  putative disease resistance protein RGA4 isoform X1

    UniProtKB/TrEMBL
    A3BDM7, Q69XW6
    Conserved Domains (3) summary
    pfam00931
    Location:181 → 475
    NB-ARC; NB-ARC domain
    cl26396
    Location:71 → 141
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    cl27891
    Location:991 → 1068
    LRR_3; Leucine Rich Repeat

  2. XM_015788963.3 → XP_015644449.1  putative disease resistance protein RGA4 isoform X1

    UniProtKB/TrEMBL
    A3BDM7, Q69XW6
    Conserved Domains (3) summary
    pfam00931
    Location:181 → 475
    NB-ARC; NB-ARC domain
    cl26396
    Location:71 → 141
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    cl27891
    Location:991 → 1068
    LRR_3; Leucine Rich Repeat

  3. XM_026026488.2 → XP_025882273.1  putative disease resistance protein RGA4 isoform X1

    UniProtKB/TrEMBL
    A3BDM7, Q69XW6
    Conserved Domains (3) summary
    pfam00931
    Location:181 → 475
    NB-ARC; NB-ARC domain
    cl26396
    Location:71 → 141
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    cl27891
    Location:991 → 1068
    LRR_3; Leucine Rich Repeat

  4. XM_026026491.2 → XP_025882276.1  putative disease resistance protein At3g14460 isoform X3

    Conserved Domains (2) summary
    pfam00931
    Location:181 → 475
    NB-ARC; NB-ARC domain
    cl26396
    Location:71 → 141
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins

  5. XM_066311663.1 → XP_066167760.1  putative disease resistance protein RGA4 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials