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LOC4341555 brefeldin A-inhibited guanine nucleotide-exchange protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341555, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4341555
Gene description
brefeldin A-inhibited guanine nucleotide-exchange protein 1
Locus tag
OSNPB_060622800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 4.6), roots after flowering (RPKM 3.4) and 6 other tissues See more
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Genomic context

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See LOC4341555 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25908445..25916930)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (25046025..25055165)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene cell division cycle protein 27 homolog B Neighboring gene bZIP transcription factor 50-like Neighboring gene uncharacterized LOC4341556 Neighboring gene transfer RNA leucine (anticodon CAG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of ARF protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
brefeldin A-inhibited guanine nucleotide-exchange protein 1
Names
Os06g0622800
P0040H10.42
putative guanine nucleotide-exchange protein GEP2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    25908445..25916930
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787781.3 → XP_015643267.1  brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X1

    UniProtKB/TrEMBL
    B8B4P5, B9FPZ4, Q69XU9
    Conserved Domains (1) summary
    PLN03076
    Location:21 → 1691
    PLN03076; ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

  2. XM_066311866.1 → XP_066167963.1  brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials