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LOC4341600 triacylglycerol lipase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341600, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4341600
Gene description
triacylglycerol lipase 2
Locus tag
OSNPB_060635300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Restricted expression toward flowers (RPKM 15.6) See more
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Genomic context

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See LOC4341600 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (26618475..26620982, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (25754857..25757550, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356938 Neighboring gene uncharacterized LOC4341599 Neighboring gene uncharacterized LOC136357043 Neighboring gene glutathione S-transferase T3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on ester bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
triacylglycerol lipase 2
Names
OSJNBa0019I19.18
Os06g0635300
putative triacylglycerol lipase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    26618475..26620982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787151.3 → XP_015642637.1  triacylglycerol lipase 2 isoform X2

    UniProtKB/TrEMBL
    B8B0G8
    Conserved Domains (1) summary
    PLN02872
    Location:46 → 411
    PLN02872; triacylglycerol lipase

  2. XM_015787152.3 → XP_015642638.1  triacylglycerol lipase 2 isoform X1

    UniProtKB/TrEMBL
    B8B0G8
    Conserved Domains (3) summary
    PLN02872
    Location:46 → 409
    PLN02872; triacylglycerol lipase
    pfam04083
    Location:52 → 110
    Abhydro_lipase; Partial alpha/beta-hydrolase lipase region
    pfam12695
    Location:93 → 224
    Abhydrolase_5; Alpha/beta hydrolase family
Nucleotide Protein
Heading Accession and Version

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