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LOC4341718 probable 4-coumarate--CoA ligase 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341718, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4341718
Gene description
probable 4-coumarate--CoA ligase 4
Locus tag
OSNPB_060656500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
4CL4; RAL1; Os4CL4
Expression
Ubiquitous expression in flowers (RPKM 59.8), roots before flowering (RPKM 45.8) and 6 other tissues See more
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Genomic context

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See LOC4341718 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (27807332..27814056, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (26943150..26949884, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene (R)-mandelonitrile lyase-like Neighboring gene CASP-like protein 2C1 Neighboring gene uncharacterized LOC112939258 Neighboring gene uncharacterized LOC4341719 Neighboring gene fasciclin-like arabinogalactan protein 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables CoA-ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
4-coumarate--CoA ligase 4
Names
(E)-ferulate--CoA ligase
4-coumaroyl-CoA synthase 4
4CL 4
LOC_Os06g44620
P0460H04.31-1
P0460H04.31-2
Protein RESISTANCE TO ALUMINUM 1
putative 4-coumarate--CoA ligase 4CL2
NP_001408603.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421674.1 → NP_001408603.1  4-coumarate--CoA ligase 4

    Status: VALIDATED

    Source sequence(s)
    CB655450, CB663058, CB667032, CI221762, CI585238
    UniProtKB/Swiss-Prot
    B7EFQ0, Q67W81, Q67W82
    UniProtKB/TrEMBL
    A2YFS4

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    27807332..27814056 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q67W82.1 GenPept UniProtKB/Swiss-Prot:Q67W82

Gene LinkOut

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Molecular Biology Databases
Research Materials