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LOC4341809 patellin-4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341809, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4341809
Gene description
patellin-4
Locus tag
OSNPB_060671800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flower buds (RPKM 11.3), flowers (RPKM 3.0) and 5 other tissues See more
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Genomic context

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See LOC4341809 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (28740866..28742999)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (27875083..27877420)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene auxin-responsive protein SAUR50 Neighboring gene twinkle homolog protein, chloroplastic/mitochondrial Neighboring gene tubulin beta-3 chain-like Neighboring gene protein G1-like2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
patellin-4
Names
OSJNBa0032M14.14
Os06g0671800
P0485A07.24
SEC14 cytosolic factor-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    28740866..28742999
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787828.3 → XP_015643314.1  patellin-4

    UniProtKB/TrEMBL
    A2YG28, A3BEJ4, Q652I7
    Conserved Domains (2) summary
    smart01100
    Location:170 → 206
    CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
    cd00170
    Location:238 → 396
    SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
Nucleotide Protein
Heading Accession and Version

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