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LOC4342114 chitinase 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342114, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4342114
Gene description
chitinase 3-like
Locus tag
OSNPB_060726100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CH6; Cht3; Cht-3; OsChia1c; P0017G10.2
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Genomic context

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See LOC4342114 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (31757719..31758975)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (30887199..30888410)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277203 Neighboring gene ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like Neighboring gene chitinase 1-like Neighboring gene NAC domain-containing protein 22-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell wall macromolecule catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to fungus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitinase 3
Names
Basic endochitinase 1
Class I chitinase c
LOC_Os06g51050
P0548E04.22
endochitinase
pathogenesis related (PR)-3 chitinase 3
NP_001408862.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421933.1 → NP_001408862.1  chitinase 3 precursor

    Status: VALIDATED

    Source sequence(s)
    CI105934, CI138210, CI293847, GQ848045
    UniProtKB/Swiss-Prot
    P24626, Q42994
    UniProtKB/TrEMBL
    A2YH54, B7E635, Q0D9D3

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    31757719..31758975
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P24626.2 GenPept UniProtKB/Swiss-Prot:P24626

Gene LinkOut

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Molecular Biology Databases
Research Materials