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LOC4342117 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342117, updated on 3-Dec-2024

Summary

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Gene symbol
LOC4342117
Gene description
1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic-like
Locus tag
OSNPB_060726400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SBE; Rbe1; Sbe1; Q-enzyme
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Genomic context

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See LOC4342117 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (31768613..31776315, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (30898176..30905822, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene chitinase 1-like Neighboring gene NAC domain-containing protein 22-like Neighboring gene protein LAZ1 Neighboring gene cyclin-B2-2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nucleotide sequence of a cDNA encoding starch-branching enzyme, or q-enzyme I, from rice endosperm. Nakamura Y, et al. Plant Physiol, 1992 Jul. PMID 16669000, Free PMC Article
  2. Starch branching enzymes from immature rice seeds. Mizuno K, et al. J Biochem, 1992 Nov. PMID 1478924
  3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-alpha-glucan branching enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic
Names
1,4-alpha-glucan branching enzyme I
LOC_Os06g51084
P0017G10.8-1
P0017G10.8-2
P0548E04.28-1
P0548E04.28-2
branching enzyme
branching enzyme-I
putative 1,4-alpha-glucan branching enzyme I
starch-branching enzyme 1
starch-branching enzyme I
NP_001389884.1
NP_001389885.1
NP_001389886.1
NP_001389888.1
NP_001389889.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402955.1 → NP_001389884.1  1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic isoform 1

    Status: VALIDATED

    Source sequence(s)
    CB644683, CF328664, CI357685, CI618880, D10752
    UniProtKB/Swiss-Prot
    Q01401, Q40664, Q5Z7Q1, Q7XZP9
    UniProtKB/TrEMBL
    A0A076FSW4, A0A2S0T020, A0A2S0T029, A1YQH7, D0TZI4, Q0D9D0

  2. NM_001402956.1 → NP_001389885.1  1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK068920, AK120332, CB644682, CB670827, CI518555, EF122470
    UniProtKB/TrEMBL
    A3BFK1, B7EAH2

  3. NM_001402957.1 → NP_001389886.1  1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK068920, CB670827, CI518555, CI596368, EF122470
    UniProtKB/TrEMBL
    A3BFK1, B7EAH2

  4. NM_001402959.1 → NP_001389888.1  1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic isoform 2

    Status: VALIDATED

    Source sequence(s)
    CB644683, CF328664, CI357685, CI768123, D10752
    UniProtKB/TrEMBL
    A3BFK1, B7EAH2

  5. NM_001402960.1 → NP_001389889.1  1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic isoform 2

    Status: VALIDATED

    Source sequence(s)
    CB644683, CF328664, CI357685, CI754127, D10752
    UniProtKB/TrEMBL
    A3BFK1, B7EAH2

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    31768613..31776315 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q01401.2 GenPept UniProtKB/Swiss-Prot:Q01401

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials