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LOC4342265 putative F-box/FBD/LRR-repeat protein At4g03220 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342265, updated on 13-Jul-2024

Summary

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Gene symbol
LOC4342265
Gene description
putative F-box/FBD/LRR-repeat protein At4g03220
Locus tag
OSNPB_070118800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1119_A04.137-1; OJ1119_A04.137-2
Expression
Ubiquitous expression in flower buds (RPKM 4.6), flowers (RPKM 3.4) and 6 other tissues See more
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Genomic context

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See LOC4342265 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (1017270..1020426)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (1006761..1010137)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At5g01610 Neighboring gene uncharacterized LOC4342264 Neighboring gene putative F-box/FBD/LRR-repeat protein At4g03220 Neighboring gene mitogen-activated protein kinase kinase kinase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative F-box/FBD/LRR-repeat protein At4g03220
Names
F-box and FBD domain-containing protein
Os07g0118800
P0022B05.102-1
P0022B05.102-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    1017270..1020426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789616.3 → XP_015645102.1  putative F-box/FBD/LRR-repeat protein At4g03220

    UniProtKB/TrEMBL
    A2YHM4, A3BG24
Nucleotide Protein
Heading Accession and Version

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