U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4342342 peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342342, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC4342342
Gene description
peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic
Locus tag
OSNPB_070133700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0507H12.7; OJ1118_D07.22
Expression
Broad expression in leaves before flowering (RPKM 15.5), flowers (RPKM 7.1) and 5 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4342342 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (1777412..1780453)

Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene L-type lectin-domain containing receptor kinase IV.1 Neighboring gene uncharacterized LOC4342341 Neighboring gene uncharacterized LOC107277131 Neighboring gene amino acid permease 6

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in thylakoid IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic
Names
Os07g0133700
immunophilin/FKBP-type peptidyl-prolyl cis-trans isomerase-like protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

    Range
    1777412..1780453
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789358.2 → XP_015644844.1  peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic

    UniProtKB/TrEMBL
    A0A8J8XII2, A2YHW8, B7F8B9, B9FVD1, Q6ZLL2
    Conserved Domains (1) summary
    COG0545
    Location:64 → 233
    FkpA; FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

  2. XM_015789356.2 → XP_015644842.1  peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic

    UniProtKB/TrEMBL
    A0A8J8XII2, A2YHW8, B7F8B9, B9FVD1, Q6ZLL2
    Conserved Domains (1) summary
    COG0545
    Location:64 → 233
    FkpA; FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

  3. XM_015789357.2 → XP_015644843.1  peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic

    UniProtKB/TrEMBL
    A0A8J8XII2, A2YHW8, B7F8B9, B9FVD1, Q6ZLL2
    Conserved Domains (1) summary
    COG0545
    Location:64 → 233
    FkpA; FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials