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LOC4342519 folate-biopterin transporter 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342519, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4342519
Gene description
folate-biopterin transporter 1, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 14.1), flower buds (RPKM 10.4) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (3894373..3900526)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (3834179..3840300)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g03800 Neighboring gene uncharacterized LOC107278554 Neighboring gene uncharacterized LOC4342521 Neighboring gene FRIGIDA-like protein 4a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
folate-biopterin transporter 1, chloroplastic
Names
Os07g0172900
P0496D04.34-1
putative integral membrane protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    3894373..3900526
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792000.3 → XP_015647486.1  folate-biopterin transporter 1, chloroplastic

    UniProtKB/TrEMBL
    B8B7N4, B9FVR4
    Conserved Domains (2) summary
    pfam03092
    Location:104 → 493
    BT1; BT1 family
    cl21472
    Location:68 → 493
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
Nucleotide Protein
Heading Accession and Version

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