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LOC4342552 low molecular mass early light-inducible protein HV60, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342552, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4342552
Gene description
low molecular mass early light-inducible protein HV60, chloroplastic
Locus tag
OSNPB_070178800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1361_E02.118
Expression
Biased expression in flower buds (RPKM 5.6), leaves before flowering (RPKM 3.4) and 2 other tissues See more
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Genomic context

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See LOC4342552 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (4206148..4207258)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4145833..4146869)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene heat stress transcription factor A-2b-like Neighboring gene low molecular mass early light-inducible protein HV60, chloroplastic Neighboring gene ruvB-like protein 1 Neighboring gene pentatricopeptide repeat-containing protein At4g20740

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
low molecular mass early light-inducible protein HV60, chloroplastic
Names
Os07g0178800
putative low molecular mass early light-induced protein,chloroplast precursor (ELIP)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    4206148..4207258
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789636.3 → XP_015645122.1  low molecular mass early light-inducible protein HV60, chloroplastic

    UniProtKB/TrEMBL
    A0A0P0X335, A3BH54, Q0D879, Q69W90
    Conserved Domains (1) summary
    cl02879
    Location:81 → 183
    Chloroa_b-bind; Chlorophyll A-B binding protein
Nucleotide Protein
Heading Accession and Version

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