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LOC4342696 uncharacterized LOC4342696 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342696, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4342696
Gene description
uncharacterized LOC4342696
Locus tag
OSNPB_070207700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1119_B04.36; OJ1559_F09.106
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Genomic context

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See LOC4342696 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (5881562..5888033)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (5805357..5811936)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein uS5x Neighboring gene polygalacturonase Neighboring gene polygalacturonase Neighboring gene F-box/LRR-repeat protein At2g43260

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphoprotein phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4342696
Names
CTD phosphatase-like protein
NLI interacting factor-like protein
Os07g0207700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    5881562..5888033
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792440.3 → XP_015647926.1  uncharacterized protein LOC4342696 isoform X1

    UniProtKB/TrEMBL
    C7EYT0, C7EYT1
    Conserved Domains (1) summary
    TIGR02251
    Location:277 → 435
    HIF-SF_euk; Dullard-like phosphatase domain

  2. XM_026027087.2 → XP_025882872.1  uncharacterized protein LOC4342696 isoform X3

    UniProtKB/TrEMBL
    A2YJB8, A3BHN9
    Conserved Domains (1) summary
    TIGR02251
    Location:277 → 435
    HIF-SF_euk; Dullard-like phosphatase domain

  3. XM_015792443.3 → XP_015647929.1  uncharacterized protein LOC4342696 isoform X2

    Conserved Domains (1) summary
    TIGR02251
    Location:276 → 434
    HIF-SF_euk; Dullard-like phosphatase domain

  4. XM_015792439.3 → XP_015647925.1  uncharacterized protein LOC4342696 isoform X1

    UniProtKB/TrEMBL
    C7EYT0, C7EYT1
    Conserved Domains (1) summary
    TIGR02251
    Location:277 → 435
    HIF-SF_euk; Dullard-like phosphatase domain

  5. XM_066312304.1 → XP_066168401.1  uncharacterized protein LOC4342696 isoform X3

    UniProtKB/TrEMBL
    A2YJB8, A3BHN9

  6. XM_066312301.1 → XP_066168398.1  uncharacterized protein LOC4342696 isoform X2

  7. XM_015792442.3 → XP_015647928.1  uncharacterized protein LOC4342696 isoform X1

    UniProtKB/TrEMBL
    C7EYT0, C7EYT1
    Conserved Domains (1) summary
    TIGR02251
    Location:277 → 435
    HIF-SF_euk; Dullard-like phosphatase domain

  8. XM_066312303.1 → XP_066168400.1  uncharacterized protein LOC4342696 isoform X3

    UniProtKB/TrEMBL
    A2YJB8, A3BHN9

  9. XM_066312300.1 → XP_066168397.1  uncharacterized protein LOC4342696 isoform X2

  10. XM_066312306.1 → XP_066168403.1  uncharacterized protein LOC4342696 isoform X4

  11. XM_015792441.3 → XP_015647927.1  uncharacterized protein LOC4342696 isoform X1

    UniProtKB/TrEMBL
    C7EYT0, C7EYT1
    Conserved Domains (1) summary
    TIGR02251
    Location:277 → 435
    HIF-SF_euk; Dullard-like phosphatase domain

  12. XM_066312302.1 → XP_066168399.1  uncharacterized protein LOC4342696 isoform X3

    UniProtKB/TrEMBL
    A2YJB8, A3BHN9

  13. XM_015792444.3 → XP_015647930.1  uncharacterized protein LOC4342696 isoform X2

    Conserved Domains (1) summary
    TIGR02251
    Location:276 → 434
    HIF-SF_euk; Dullard-like phosphatase domain

  14. XM_066312305.1 → XP_066168402.1  uncharacterized protein LOC4342696 isoform X4

  15. XM_066312307.1 → XP_066168404.1  uncharacterized protein LOC4342696 isoform X5

  16. XM_066312308.1 → XP_066168405.1  uncharacterized protein LOC4342696 isoform X6

RNA

  1. XR_010742507.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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