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LOC4342744 uncharacterized LOC4342744 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342744, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4342744
Gene description
uncharacterized LOC4342744
Locus tag
OSNPB_070222900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 5.1), flower buds (RPKM 3.6) and 6 other tissues See more
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Genomic context

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See LOC4342744 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (6882955..6886235)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (6803381..6806705)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g80270, mitochondrial Neighboring gene acyl carrier protein 1, mitochondrial Neighboring gene ADP-ribosylation factor 1 Neighboring gene uncharacterized LOC107281581

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4342744
Names
KHG-KDPG bifunctional aldolase-like
KHG/KDPG aldolase
Os07g0222900
P0592C06.131

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    6882955..6886235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015790013.3 → XP_015645499.1  uncharacterized protein LOC4342744

    UniProtKB/TrEMBL
    B8B8G4, B9FW80
    Conserved Domains (1) summary
    COG0800
    Location:33 → 231
    Eda; 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials