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LOC4342838 IAA-amino acid hydrolase ILR1-like 7 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342838, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4342838
Gene description
IAA-amino acid hydrolase ILR1-like 7
Locus tag
OSNPB_070249700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ILL7
Expression
Ubiquitous expression in roots before flowering (RPKM 30.6), flowers (RPKM 25.3) and 6 other tissues See more
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Genomic context

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See LOC4342838 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (8402212..8405632, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (8321648..8325071, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene vesicle-associated membrane protein 724 Neighboring gene mRNA-decapping enzyme-like protein Neighboring gene IAA-amino acid hydrolase ILR1-like 8 Neighboring gene IAA-amino acid hydrolase ILR1-like 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables IAA-Ala conjugate hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in auxin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
iAA-amino acid hydrolase ILR1-like 7
Names
LOC_Os07g14590
P0021G06.114
putative IAA amidohydrolase
NP_001409003.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422074.1 → NP_001409003.1  iAA-amino acid hydrolase ILR1-like 7 precursor

    Status: VALIDATED

    Source sequence(s)
    AK243613, AP014963
    UniProtKB/TrEMBL
    A0A0P0X550

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    8402212..8405632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H3C9.1 GenPept UniProtKB/Swiss-Prot:Q8H3C9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials