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LOC4342980 aspartokinase 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342980, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4342980
Gene description
aspartokinase 2, chloroplastic
Locus tag
OSNPB_070300900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4342980 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (11979443..11988132, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (11865416..11874293, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g63330-like Neighboring gene protein PIN-LIKES 7 Neighboring gene uncharacterized LOC136357365 Neighboring gene DEAD-box ATP-dependent RNA helicase 5-like Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aspartate kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homoserine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lysine biosynthetic process via diaminopimelate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast stroma IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartokinase 2, chloroplastic
Names
B1032F05.40-1
B1032F05.40-2
B1114D08.10-1
B1114D08.10-2
Os07g0300900
putative precursor monofunctional aspartokinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    11979443..11988132 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792517.3 → XP_015648003.1  aspartokinase 2, chloroplastic isoform X2

    UniProtKB/TrEMBL
    B9F9Y5, Q69J73, Q6YS32
    Conserved Domains (1) summary
    PLN02551
    Location:56 → 556
    PLN02551; aspartokinase

  2. XM_015792516.3 → XP_015648002.1  aspartokinase 2, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A0P0X4S9, B9F9Y5, Q6YS33
    Conserved Domains (1) summary
    PLN02551
    Location:56 → 558
    PLN02551; aspartokinase
Nucleotide Protein
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