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LOC4343121 aquaporin PIP2-5-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343121, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4343121
Gene description
aquaporin PIP2-5-like
Locus tag
OSNPB_070448400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PIP2-5; OsPIP2;5; OsJ_023143; OJ1047_A06.108-1; OJ1047_A06.108-2
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Genomic context

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See LOC4343121 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (15534103..15535476)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (15376920..15378327)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene aquaporin PIP2-4-like Neighboring gene aquaporin PIP2-4-like Neighboring gene probable aquaporin PIP2-1 Neighboring gene mitochondrial pyruvate carrier 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables water channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aquaporin PIP2-5
Names
LOC_Os07g26660
P0475E07.134-1
P0475E07.134-2
Plasma membrane intrinsic protein 2-5
plasma membrane integral protein-like
putative plasma membrane integral protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422135.1 → NP_001409064.1  aquaporin PIP2-5

    Status: VALIDATED

    Source sequence(s)
    AK107700, AP014963, EE591494
    UniProtKB/Swiss-Prot
    A3BJC1, Q8GRI8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    15534103..15535476
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GRI8.1 GenPept UniProtKB/Swiss-Prot:Q8GRI8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials