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LOC4343133 uncharacterized LOC4343133 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343133, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4343133
Gene description
uncharacterized LOC4343133
Locus tag
OSNPB_070452500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 86.0), roots after flowering (RPKM 61.9) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (15766456..15769019, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (15602020..15604650, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene alpha-galactosidase Neighboring gene uncharacterized LOC4343132 Neighboring gene uncharacterized LOC107276075 Neighboring gene uncharacterized LOC4343134

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in ceramide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular sphingolipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4343133
Names
ORM1-like protein 3
OSJNBb0062P14.116-1
Os07g0452500
putative ORMDL2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    15766456..15769019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791833.3 → XP_015647319.1  uncharacterized protein LOC4343133

    UniProtKB/TrEMBL
    A0A0P0X5I3, B8B5Q5, B9FX13, Q7EY59
    Conserved Domains (1) summary
    pfam04061
    Location:21 → 156
    ORMDL; ORMDL family
Nucleotide Protein
Heading Accession and Version

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