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LOC4343218 peptidyl-prolyl cis-trans isomerase CYP21-4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343218, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4343218
Gene description
peptidyl-prolyl cis-trans isomerase CYP21-4
Locus tag
OSNPB_070476500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 72.2), leaves after flowering (RPKM 70.6) and 6 other tissues See more
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Genomic context

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See LOC4343218 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (17420475..17426126, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (17254933..17260670, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein CTR9 homolog Neighboring gene uncharacterized LOC136357312 Neighboring gene thioredoxin-like protein CDSP32, chloroplastic Neighboring gene DNA-directed RNA polymerase III subunit RPC8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein peptidyl-prolyl isomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peptidyl-prolyl cis-trans isomerase CYP21-4
Names
Os07g0476500
P0640E12.105
peptidyl-prolyl cis-trans isomerase -related-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    17420475..17426126 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792489.3 → XP_015647975.1  peptidyl-prolyl cis-trans isomerase CYP21-4

    UniProtKB/TrEMBL
    A0A0P0X5K3, B8B5Z8, B9FX67, Q7EYT3
    Conserved Domains (1) summary
    cd00317
    Location:82 → 226
    cyclophilin; cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug ...

  2. XM_015792488.2 → XP_015647974.1  peptidyl-prolyl cis-trans isomerase CYP21-4

    UniProtKB/TrEMBL
    A0A0P0X5K3, B8B5Z8, B9FX67, Q7EYT3
    Conserved Domains (1) summary
    cd00317
    Location:82 → 226
    cyclophilin; cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug ...
Nucleotide Protein
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