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LOC4343350 glucan endo-1,3-beta-glucosidase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343350, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4343350
Gene description
glucan endo-1,3-beta-glucosidase 1
Locus tag
OSNPB_070510200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flowers (RPKM 11.9), flower buds (RPKM 5.7) and 5 other tissues See more
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Genomic context

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See LOC4343350 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (19663765..19669612)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (19436911..19442954)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene methionine aminopeptidase 1B, chloroplastic Neighboring gene uncharacterized LOC136357144 Neighboring gene uncharacterized LOC4343351 Neighboring gene UDP-glycosyltransferase 88B1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase 1
Names
Os07g0510200
P0409B11.21-1
P0409B11.21-2
putative beta-1,3-glucanase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    19663765..19669612
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792506.2 → XP_015647992.1  glucan endo-1,3-beta-glucosidase 1 isoform X1

    UniProtKB/TrEMBL
    A0A0P0X6V9, B8B6P5, Q0D657, Q6Z4B3
    Conserved Domains (2) summary
    smart00768
    Location:391 → 476
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:45 → 372
    Glyco_hydro; Glycosyl hydrolases

  2. XM_066312495.1 → XP_066168592.1  glucan endo-1,3-beta-glucosidase 1 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials