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LOC4343409 disease resistance protein RGA2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343409, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4343409
Gene description
disease resistance protein RGA2
Locus tag
OSNPB_070521600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1372_D12.104; OJ1657_A07.115
Expression
Ubiquitous expression in roots after flowering (RPKM 4.3), leaves after flowering (RPKM 4.1) and 6 other tissues See more
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Genomic context

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See LOC4343409 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (20391058..20397370, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (20163919..20170232, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343406 Neighboring gene uncharacterized LOC112939694 Neighboring gene putative disease resistance RPP13-like protein 1 Neighboring gene uncharacterized LOC107281679

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to other organism IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
disease resistance protein RGA2
Names
Os07g0521600
putative resistance complex protein I2C-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    20391058..20397370 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792158.3 → XP_015647644.1  disease resistance protein RGA2

    UniProtKB/TrEMBL
    A0A0U2RG80, A3BKF8, Q84ZR6
    Conserved Domains (5) summary
    COG4886
    Location:732 → 851
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:733 → 755
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:1081 → 1102
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:1033 → 1046
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam00931
    Location:233 → 512
    NB-ARC; NB-ARC domain

RNA

  1. XR_001547794.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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