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LOC4343458 ankyrin repeat-containing protein At5g02620 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343458, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4343458
Gene description
ankyrin repeat-containing protein At5g02620
Locus tag
OSNPB_070532500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in leaves before flowering (RPKM 14.7), leaves after flowering (RPKM 7.4) and 3 other tissues See more
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Genomic context

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See LOC4343458 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (20874257..20876727)

Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein PIK6-NP-like Neighboring gene ankyrin repeat-containing protein At5g02620 Neighboring gene uncharacterized LOC9269953 Neighboring gene aspartic proteinase nepenthesin-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein phosphatase 1 binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein phosphatase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat-containing protein At5g02620
Names
OSJNBa0039D04.7
Os07g0532500
ankyrin repeat protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

    Range
    20874257..20876727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015790251.2 → XP_015645737.2  ankyrin repeat-containing protein At5g02620

    UniProtKB/TrEMBL
    A3BKL8
    Conserved Domains (5) summary
    PHA02874
    Location:179 → 488
    PHA02874; ankyrin repeat protein; Provisional
    COG0666
    Location:108 → 241
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:334 → 363
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:335 → 423
    Ank_2; Ankyrin repeats (3 copies)
    pfam13962
    Location:500 → 606
    PGG; Domain of unknown function
Nucleotide Protein
Heading Accession and Version

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