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LOC4343506 cysteine-rich receptor-like protein kinase 6 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343506, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4343506
Gene description
cysteine-rich receptor-like protein kinase 6
Locus tag
OSNPB_070542400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1729_E01.7
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Genomic context

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See LOC4343506 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (21662654..21665723, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (21434610..21437684, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich receptor-like protein kinase 6 Neighboring gene cysteine-rich receptor-like protein kinase 10 Neighboring gene cysteine-rich receptor-like protein kinase 10 Neighboring gene uncharacterized LOC136357445

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine-rich receptor-like protein kinase 6
Names
Os07g0542400
putative serine/threonine kinase -related protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    21662654..21665723 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789354.3 → XP_015644840.1  cysteine-rich receptor-like protein kinase 6

    UniProtKB/TrEMBL
    A0A0N7KNL8, Q6Z5A3
    Conserved Domains (2) summary
    cd14066
    Location:377 → 637
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    pfam01657
    Location:46 → 142
    Stress-antifung; Salt stress response/antifungal
Nucleotide Protein
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