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LOC4343580 transcription factor MYB102 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343580, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4343580
Gene description
transcription factor MYB102
Locus tag
OSNPB_070558100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
myb; P0567H04.9
Expression
Broad expression in mature seeds (RPKM 3.7), roots before flowering (RPKM 0.7) and 5 other tissues See more
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Genomic context

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See LOC4343580 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22523010..22524683, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22293652..22295341, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized GPI-anchored protein At4g28100 Neighboring gene uncharacterized LOC4343579 Neighboring gene putative 3'(2'),5'-bisphosphate nucleotidase, mitochondrial Neighboring gene putative 3'(2'),5'-bisphosphate nucleotidase, mitochondrial Neighboring gene uncharacterized LOC136357310

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Rice transcription factor OsMYB102 delays leaf senescence by down-regulating abscisic acid accumulation and signaling. Piao W, et al. J Exp Bot, 2019 May 9. PMID 30825376, Free PMC Article
  2. The electronic Plant Gene Register. . Plant Physiol, 1997 May. PMID 9159957, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. OsMYB102 plays a critical role in leaf senescence by down-regulating ABA accumulation and ABA signaling responses.
    Title: Rice transcription factor OsMYB102 delays leaf senescence by down-regulating abscisic acid accumulation and signaling.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
transcription factor MYB102
Names
Os07g0558100
transcription factor MYB39

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    22523010..22524683 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015790036.3 → XP_015645522.1  transcription factor MYB102

    UniProtKB/TrEMBL
    O04141, Q0D5I7, Q6Z414
    Conserved Domains (1) summary
    PLN03091
    Location:1 → 128
    PLN03091; hypothetical protein; Provisional
Nucleotide Protein
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