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LOC4343622 uncharacterized LOC4343622 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343622, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4343622
Gene description
uncharacterized LOC4343622
Locus tag
OSNPB_070565200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4343622 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22888826..22893421)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22659388..22664105)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein uS17 Neighboring gene small ribosomal subunit protein uS17 Neighboring gene uncharacterized LOC4343623 Neighboring gene protein STRUBBELIG-RECEPTOR FAMILY 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4343622
Names
CCR4-NOT transcription complex subunit 9
Os07g0565200
cell differentiation protein RCD1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    22888826..22893421
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026027259.2 → XP_025883044.1  uncharacterized protein LOC4343622 isoform X1

    Conserved Domains (1) summary
    pfam04078
    Location:236 → 406
    Rcd1; Cell differentiation family, Rcd1-like

  2. XM_015789106.3 → XP_015644592.1  uncharacterized protein LOC4343622 isoform X2

    UniProtKB/TrEMBL
    A0A0P0WEP8, B8AU48, B9FCG5, Q0JA69, Q7XLD1
    Conserved Domains (1) summary
    pfam04078
    Location:49 → 307
    Rcd1; Cell differentiation family, Rcd1-like
Nucleotide Protein
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