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LOC4343629 probable protein phosphatase 2C 64 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343629, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4343629
Gene description
probable protein phosphatase 2C 64
Locus tag
OSNPB_070566200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsPP2C64; OsJ_023811; OJ1773_H01.121
Expression
Broad expression in roots before flowering (RPKM 49.7), leaves before flowering (RPKM 17.0) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22955569..22960756, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22726206..22731316, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene putative cell wall protein Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC136357384 Neighboring gene NAC domain-containing protein 10-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-threonine dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable protein phosphatase 2C 64
Names
LOC_Os07g37890
putative protein phosphatase 2C
NP_001409140.1
XP_066168084.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422211.1 → NP_001409140.1  probable protein phosphatase 2C 64

    Status: VALIDATED

    Source sequence(s)
    AK069418, AK070426, CI309320, CI534831, CI608205
    UniProtKB/Swiss-Prot
    A0A0P0X7E4, Q8H4S6
    UniProtKB/TrEMBL
    A2YMQ6

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    22955569..22960756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066311987.1 → XP_066168084.1  probable protein phosphatase 2C 64 isoform X1

    UniProtKB/Swiss-Prot
    A0A0P0X7E4, Q8H4S6
    UniProtKB/TrEMBL
    A2YMQ6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H4S6.2 GenPept UniProtKB/Swiss-Prot:Q8H4S6

Gene LinkOut

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