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LOC4343633 uncharacterized protein At4g19900 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343633, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4343633
Gene description
uncharacterized protein At4g19900
Locus tag
OSNPB_070567300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1092_A07.115
Expression
Ubiquitous expression in flowers (RPKM 36.9), flower buds (RPKM 25.7) and 6 other tissues See more
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Genomic context

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See LOC4343633 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (23021196..23027902, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22791761..22798466, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene probable arabinosyltransferase ARAD1 Neighboring gene obtusifoliol 14-alpha demethylase Neighboring gene obtusifoliol 14-alpha demethylase-like Neighboring gene uncharacterized LOC107278343 Neighboring gene cytochrome c6, chloroplastic Neighboring gene scarecrow-like protein 23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein At4g19900
Names
Os07g0567300

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    23021196..23027902 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792103.3 → XP_015647589.1  uncharacterized protein At4g19900 isoform X2

    UniProtKB/TrEMBL
    A0A0P0X7U1, Q0D5D9, Q84SM4
    Conserved Domains (2) summary
    pfam04488
    Location:355 → 462
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif
    pfam04572
    Location:489 → 615
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region

  2. XM_026026898.2 → XP_025882683.1  uncharacterized protein At4g19900 isoform X1

    UniProtKB/TrEMBL
    B9FXZ6, Q0D5D9
    Conserved Domains (2) summary
    pfam04488
    Location:355 → 462
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif
    pfam04572
    Location:519 → 645
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region

RNA

  1. XR_010742866.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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